Plant Sciences Institute

Department of Agronomy

Raymond F. Baker Center for Plant Breeding

Dr. Thomas Lübberstedt

Publications

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Link to our group
http://www.agron.iastate.edu/lubberstedtlab/.

 

Publications 2003-2012

Pfeifer, M., Mayer, K., Asp, T., Martis, M., Lübberstedt, T., Frei, U.K., Studer, B. (2013) The Lolium genome zipper – targeted use of grass genome resources for ryegrass genomics. Plant Phys (in press)

Abdel-Ghani, A., Kumar, B.T., Montomares, J.R., Gonzalez-Portilla, P., Jansen, C., San Martin, J.P., Lee, M.Lübberstedt, T.  (2012) Genotypic variation for root traits of maize inbred lines grown under contrasting nitrogen conditions. Euphytica (in press)

Chen,Y Liu, H., Ali, F., Scott, P.M., Ji, Q., Frei, U.K., Lübberstedt, T. (2012) Bm6 - A novel brown midrib gene in maize was mapped to a 180 kb region in maize. Theor. Appl. Genet. 125:1223-12

Kumar, B.T., Abdel-Ghani, A., Hochholdinger, F., Montomares, J.R, Lübberstedt, T. (2012) Genotypic variation for root architectural traits in maize (Zea mays L.) inbred lines. Plant Breeding 131:465-478

Lübberstedt, T.., Frei, U.K. (2012) Application of doubled haploids for target gene fixation in backcross programs. Plant Breeding 131:449-452
Zhao, X., Tan, G., Xing, Y., Wei, L., Lübberstedt, T., Xu, M.L. (2012) Marker-assisted introgression of qHSR1 to improve maize resistance to head smut. Mol. Breed. 30:1077-1088
Brenner, E.A., Blanco, M., Gardner, C., Lübberstedt, T. (2012) Genotypic and phenotypic characterization of Germplasm Enhancement in Maize doubled haploid lines for cell wall digestibility. Mol. Breeding 30:1001-1016
Arias, A., Frei, U.K., Wollenweber, B., Lübberstedt, T. (2012) A tool for estimation of pollen compatibility in a digenic gametophytic self incompatibility system in autotetraploids species. BMC Bioinformatics 13:125
Jones, R., Reinot, T., Frei, U.K., Tseng, Y., Lübberstedt, T., McClelland, J., (2012) Selection of Haploid Maize Kernels from Hybrid Kernels for Plant Breeding Using Near Infrared Spectroscopy and SIMCA Analysis. Applied Spectroscopy 66: 110-119
Studer, B., Byrne, S., Nielsen, R., Panitz, F., Bendixen, C., Islam, M.S., Pfeiffer, M., Lübberstedt, T., Asp, T. (2012) A transcriptome map of perennial ryegrass (Lolium perenne L.). BMC Genomics 13:140 [Highly Accessed]
Jansen, C., Lübberstedt, T. (2012) Turning corn cobs into a valuable feedstock. BioEnergy Research 5: 20-31
Arias, A., Studer, B., Frei, U.K., Lübberstedt, T. (2012) Prospects for hybrid breeding in bioenergy grasses. BioEnergy Research 5: 10-19
Brenner, E.A., Salazar, A.M., Zabotina, O.,  Lübberstedt, T.  (2012) Characterization of European forage maize lines for stover composition and associations with polymorphisms within O-methyltransferase genes. Plant Sci. 185: 281-287
Asp, T., Byrne, S., Gundlach, H., Bruggmann, R., Meyer, K.F.X., Andersen, J., Xu, M., Lenk, I., Greve, M., Lübberstedt, T. (2011) Comparative sequence analysis of VRN1 alleles of Lolium perenne with the colinear regions in barley, wheat, and rice. Mol Gen Genomics 286:433-47
Fiil, A., Jensen, L.B., Fjellheim, S., Lübberstedt, T.,  Andersen, J.R. (2011) Variation in vernalization response of a geographic diverse collection of timothy (Phleum pratense) accessions. Crop Sci. 51: 2689-2697
Brazauskas, G., Lenk, I., Pedersen, M.G., Studer, B., Lübberstedt, T. (2011) Genetic variation, population structure, and linkage disequilibrium in European elite germplasm of perennial ryegrass. Plant Sci. 181: 412-420
Fiil, A., Andersen, J.R., Roulund, N., Lenk, I., Lübberstedt, T. (2011) Nucleotide diversity and linkage disequilibrium in 11 Lolium perenne genes involved in flowering control. Plant Sci. 180, 228-237
Ali, F., Scott, M.P., Chen, Y., Lübberstedt, T. (2010): Identification of new brown-midrib (bm) mutant genes in maize by tests of allelism. Plant Breeding 129, 724-726
Ji, Q., Yang, B., Lee, M., Chen, Y., Lübberstedt, T. (2010) Mapping of QTL conferring resistance to Foxtail Mosaic Virus in maize using the IBM Population. Plant Breeding 129, 721-723
Lübberstedt, T., Bhattacharya, M. (2010) Application of Genomics to Plant Breeding. In: Principles and Practises of Plant Genomics, Vol. 3: Advanced Genomics, Kole C. and Abbott, A.G. (eds.), Science Publishers, Inc., CRC Press, New Hampshire and Edenbridge Ltd., British Isles, 494-527
Studer, B., Asp, T., Frei, U., Hentrup, S., Meally, H., Guillard, A., Barth, S., Muylle, H., Roldan-Ruiz, I., Barre, P., Koning-Boucoiran, C., Uenk-Stunnenberg, G., Dolstra, O., Skøt, L., Skøt, K.P., Turner, L.B., Humphreys, M.O., Kölliker, R., Roulund, N., Nielsen, K.K., Lübberstedt, T. (2010) EST-derived SSR markers used as anchor loci for the construction of a consensus linkage map in ryegrass (Lolium spp.). BMC Plant Biol 10:177
Chen, Y., Lübberstedt, T. (2010) Molecular basis of trait correlations. Trends in Plant Sciences 15, 454-461
Brazauskas G., Pašakinskienė I., Asp, T., Lübberstedt, T. (2010) Nucleotide diversity and linkage disequilibrium in 5 Lolium perenne genes with putative role in plant architecture. Plant Sci. 179, 194-201
Brenner, E.A., Chen, Y., Zein, I., Andersen, J.R., Wenzel, G., Ouzunova, M., Eder, J., Darnhofer, B. Lübberstedt, T. (2010) Polymorphisms at O-methyltransferase loci are associated with forage quality in European maize (Zea mays L.). BMC Plant Biol 10:27
Ingvardsen, C.R., Xing, Y., Frei, U.K., Lübberstedt, T. (2010) Genetical and physical fine mapping of Scmv2, a potyvirus resistance gene in maize. Theor. Appl. Genet. 110: 1621-1630
Chen, Y., Brenner, E.A., Zein, I., Andersen, J.R., Wenzel, G., Ouzunova, M., Eder, J., Darnhofer, B. Lübberstedt, T. (2010): Polymorphisms within genes coding for enzymes involved in the phenylpropanoid pathway are associated with morphological and yield traits. BMC Plant Biol 10:12
Kopecký, D., Bartoš, J., Lukaszewski, A.J., Baird, J.H., Černoch, V., Kölliker, R., Rognli, O.A., Blois, H., Caig, V., Lübberstedt, T., Studer, B., Doležel, J., Kilian, A. (2009) Develeopment and mapping of DART markers within Festuca-Lolium complex. BMC Genomics 10:473
Frei, U., Wollenweber, B., Lübberstedt, T. (2009) PolyMin: software selecting an optimal SNP combination for genotype differentiation. BMC Bioinformatics 10:176
Salas-Fernandez, M., Becraft, P., Yin, Y., Lübberstedt, T. (2009) From dwarves to giants? Plant height manipulation for biomass yield. Trends in Plant Sciences 14:454-461
Użarowska, A., Dionisio, G., Sarholz, B., Piepho, H.P., Xu, M., Ingvardsen, C.R., Wenzel, G., Lübberstedt, T. (2009) Validation of candidate genes putatively associated with resistance to SCMV and MDMV in maize (Zea mays L.) by expression profiling. BMC Plant Biol 9:15


Pedersen, A.J., Andersen, J.R., Jensen, L.B., Lübberstedt, T. (2009) Functional markers for vernalisation response in grasses. In: Application of Genomics and Bioinformatics in Plants; G.P. Rao, C. Wagner & R.K. (eds.), Singh Studium Press LLC, Texas, 311-341.

Andersen, J.R., Asp, T., Lu, Y., Kloiber-Maitz, M., Ouzonova M., Lübberstedt, T. (2009) Development of gene-tagged SNP markers in putative laccases of maize (Zea mays L.). Plant Breeding 128: 423-425.

Kopecký, D., Bartoš, J., Lukaszewski, A.J., Baird, J.H., Černoch, V., Kölliker, R., Rognli, O.A., Blois, H., Caig, V., Lübberstedt, T., Studer, B., Doležel, J., Kilian, A. (2009) Develeopment and mapping of DART markers within Festuca-Lolium complex. BMC Genomics 10:473.

Lübberstedt, T., Bhattacharya, M. (2010) Application of Genomics to Plant Breeding. In: Principles and Practises of Plant Genomics, Vol. 3: Advanced Genomics, Kole C. and Abbott, A.G. (eds.), Science Publishers, Inc., New Hampshire and Edenbridge Ltd., British Isles (in press).

Ji, Q., Yang, B., Lee, M., Chen, Y., Lübberstedt, T. (2010) Mapping of QTL conferring resistance to Foxtail Mosaic Virus in maize using the IBM Population. Plant Breeding (in press).

Ingvardsen, C.R., Xing, Y., Frei, U.K., Lübberstedt, T. (2010) Genetical and physical fine mapping of Scmv2, a potyvirus resistance gene in maize. Theor. Appl. Genet. (in press).

Brenner, E.A., Chen, Y., Zein, I., Andersen, J.R., Wenzel, G., Ouzunova, M., Eder, J., Darnhofer, B. Lübberstedt, T. (2010) Polymorphisms at O-methyltransferase loci are associated with forage quality in European maize (Zea mays L.). BMC Plant Biol 10:27.

Andersen, J.R., Asp, T., Lu, Y., Kloiber-Maitz, M., Ouzonova M., Lübberstedt, T. (2009) Development of gene-tagged SNP markers in putative laccases of maize (Zea mays L.). Plant Breeding (in press).

Andersen, J.R., Zein, I., Wenzel, G., Darnhofer, B., Eder, J., Ouzunova, M., Lübberstedt, T. 2008. Association of polymorphisms within phenylpropanoid pathway genes with forage quality traits in European maize (Zea mays L.) inbreds. BMC Plant Biol 8:2.

Asp, T., Frei, U., Didion, T., Nielsen, K.K., Lübberstedt, T. 2008. Single nucleotide polymorphism discovery in a collection of Lolium perenne EST sequences. BMC Plant Biology (in Revision).

Bagge, M., Lübberstedt, T. 2008. Functional markers in wheat - technical and economic aspects. Mol Breed. (in Revision).

Jensen, L.B., Holm, P.B., Lübberstedt, T. 2008. Cross-species amplification of 105 Lolium perenne SSR loci in 22 species within the Poaceae. Mol. Ecol. Notes (doi: 10.1111/j.1471-8286.2007.01814.x).

Jiang, L., Invardsen, C, Lübberstedt, T, Xu, M. 2008. The Pic19 NBS-LRR gene family members are closely linked to Scmv1, but not involved in maize resistance to sugarcane mosaic virus. Genome (in Revision).

Lübberstedt, T., Bhattacharya, M. (2009) Application of Genomics to Plant Breeding. In: Principles and Practises of Plant Genomics, Vol. 3: Advanced Genomics, Kole C. and Abbott, A.G. (eds.), Science Publishers, Inc., New Hampshire and Edenbridge Ltd., British Isles (in press).

Pedersen, A.J., Andersen, J.R., Jensen, L.B., Lübberstedt, T. 2008. Functional markers for vernalisation response in grasses. In: Application of Genomics and Bioinformatics in Plants; G.P. Rao, C. Wagner & R.K. (eds.), Singh Studium Press LLC, Texas, 311-341.

Pivoriene, O., Pasakinskiene, I., Brazauskas, G., Lideikyte, L., Jensen, L.B., Lübberstedt, T. 2008. Inter-simple sequence repeats (ISSR) loci mapping in the genome of perennial ryegrass. Biologica (in Revision).

Schejbel, B, Jensen, L.B., Xing, Y., Asp, T., Lübberstedt, T. (2008) Mapping of QTL for powdery mildew resistance and resistance gene analogues in perennial ryegrass. Plant Breeding 127: 368-375.

Studer, B., Asp, T., Frei, U., Hentrup, S., Meally, H., Guillard, A., Barth, S., Muylle, H., Roldan-Ruiz, I., Barre, P., Koning-Boucoiran, C., Uenk-Stunnenberg, G., Dolstra, O., Skøt, L., Skøt, K.P., Turner, L.B., Humphreys, M.O., Kölliker, R., Roulund, N., Nielsen, K.K., Lübberstedt, T. 2008. Expressed sequence tag-derived microsatellite markers of perennial ryegrass (Lolium perenne l.). Mol. Breed. (doi:10.1007/s11032-007-9148-0).

Studer, B., Jensen, L.B., Hentrup, S., Brazauskas, G., Kölliker, R., Lübberstedt, T. 2008. QTL mapping of seed yield and fertility traits in perennial ryegrass. TAG (in Revision).

Użarowska, A., Dionisio, G., Sarholz, B., Piepho, H.P., Xu, M., Ingvardsen, C.R., Wenzel, G., Lübberstedt, T. (2009) Validation of candidate genes putatively associated with resistance to SCMV and MDMV in maize (Zea mays L.) by expression profiling. BMC Plant Biol 9:15.

Barrière, Y., Riboulet, C., Méchin, V., Pichon, M., Cardinal, A., Lübberstedt, T., Lapierre, C. (2007) Genetics and Genomics of lignification in grass cell walls based on maize as a model system. Genes, Genomes and Genomics (GGG) (in press).

Schejbel, B, Jensen, L.B., Xing, Y., Asp, T., Lübberstedt, T. (2007) Mapping of QTL for powdery mildew resistance and resistance gene analogues in perennial ryegrass. Plant Breeding (in press).

Xing, Y., Frei, U., Anderson, B., Asp, T., Lübberstedt, T. (2007) Nucleotide diversity and linkage disequilibrium in 11 Lolium perenne genes. BMC Plant Biology 7:43

Asp, T., Frei, U., Didion, T., Nielsen, K.K., Lübberstedt, T. (2007) Frequency, type, distribution, and annotation of EST-SSRs from three genotypes of Lolium perenne, and their conservation in orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa. BMC Plant Biology 7:36

Ingvardsen, C., Schejbel, B., Lübberstedt, T. (2007) Functional markers for disease resistance in plants. Progress in Botany 69: 61-87

Schejbel, B, Jensen, L.B., Xing, Y., Lübberstedt, T. (2007) QTL mapping of crown rust resistance in perennial ryegrass. Plant Breeding 126, 347-352.

Lu, Y.C., Asp, T., Schejbel B., Li Y., Wang, T.Y., Lübberstedt, T. (2007) Cloning and sequence analysis of laccases from maize. Journal of Maize Science (Chinese) 15(2) : 9-13

Jensen, L.B., Holm, P.B., Lübberstedt, T. (2007) Cross-species amplification of 105 Lolium perenne SSR loci in 22 species within the Poaceae. Mol. Ecol. Notes (doi: 10.1111/j.1471-8286.2007.01814.x)

Lübberstedt, T. (2007) Application of genomics in forage crop breeding. In: Genomics assisted crop improvement: Vol. 2: Genomics applications in Crops, R.K. Varshney und R. Tuberosa (eds.), Springer, Heidelberg 281-305

Andersen, J.R., Zein, I., Krützfeldt, B., Eder, J., Ouzunova, M., Wenzel, G., Lübberstedt, T. (2007) Polymorphisms at the Phenylalanine Ammonia-Lyase locus are associated with forage quality in European maize (Zea mays L.). Theor. Appl. Genet. 114: 307-319

Shi, C., Uzarowska, A., Ouzunova, M., Wenzel, G., Lübberstedt, T. (2007) Association between cell wall digestibility and candidate gene expression profiles by application of genetical genomics to a Flint x Flint maize recombinant inbred line population. BMC Genomics 8:22

Bagge, M., Xia, X., Lübberstedt, T. (2007) Functional markers in wheat. Curr. Opin. Plant Biol. 10: 1-6

Lu, Y.C., Asp, T., Li Y., Wang, T.Y., Lübberstedt, T. (2007) Cloning and sequence analysis of laccase-coding gene fragments from ryegrass(Lolium perenne). Journal of Natural Sciences of Heilongjiang University (Chinese) 24(2): 214-218

Lübberstedt, T., Ingvardsen, C., Melchinger, A. E., Xing, Y., Salomon, R., Redinbaugh, P. (2006) Two chromosome segments confer multiple potyvirus resistance in maize. Plant Breeding 125: 1-5.

Shi, C., Koch, G., Ouzunova, M., Wenzel, G., Zein, I., Lübberstedt, T. (2006) Comparison of maize brown-midrib isogenic lines by cellular UV-microspectrophotometry and comparative transcript profiling. Plant Mol. Biol. 62: 697-714

Xing, Y., Ingvardsen, C., Salomon, R., Lübberstedt, T. (2006) Analysis of SCMV resistance in maize in an isogenic dihybrid crossing scheme and implications for breeding potyvirus resistant maize hybrids. Genome 49: 1274-1282

Zein, I., Wenzel, G., Andersen, J.R., Lübberstedt, T. (2007) Low level of linkage disequilibrium at the COMT (Caffeic acid O-methyltransferase) locus in European maize (Zea mays L.). Gen Res & Crop Evol. 54: 139-148

Quint, M., Lübberstedt, T. (2007) Resistance Gene Analogs – rapid identification of R gene candidates. In: Techniques in Diagnosis of Plant Viruses, G.P. Rao, R.A. Valverde, and C.I. Dovas (eds.), Studium Press LCC, Texas, USA, 265-285

Uzarowska, A., Keller, B., Piepho, H.-P., Schwarz, G., Ingvardsen, C., Wenzel, G., Lübberstedt, T. (2007) Comparative expression profiling in meristems of inbred – hybrid triplets of maize based on morphological investigations of heterosis for plant height. Plant Mol. Biol. 63: 21-34

Farrar, K., Asp, T., Lübberstedt, T., Xu, M., Christiansen, C., Thomas, A., Humphreys, M., Donnison, I. (2007) Construction and utilization of two Lolium perenne BAC libraries. Mol. Breed. 19: 15-23

Shi, C., Thümmler, F., Wenzel, G., Melchinger, A.E., Lübberstedt, T. (2006) Identification of genes differentially expressed in association with SCMV resistance in maize using comprehensive microarrays. Plant Sci. 170: 159-169

Andersen, J.R., Jensen, L.B., Asp, T., Lübberstedt, T. (2006) Vernalization response in perennial ryegrass (Lolium perenne L.) involves orthologues of diploid wheat (Triticum monococcum) VRN1 and rice (Oryza sativa) Hd1. Plant Mol. Biol. 60: 481-494

Andersen, J.R., Schrag, T., Zein, I., Melchinger, A.E., Lübberstedt, T. (2005) Functional marker validation of polymorphisms in the maize dwarf8 gene affecting flowering time in European elite materials. Theor. Appl. Genet. 111: 206-217

Lübberstedt, T. (2005) Objectives and benefits of molecular breeding in forage species. In: Molecular breeding for the genetic improvement of forage crops and turf, M.O. Humphreys (ed.), Wageningen Academic Publishers, Wageningen, 19-30

Jensen, L.B., Aarens, P., Andersen, C.H., Holm, P.B., Ghesquiere, M., Julier, B., Lübberstedt, T., Muylle, H., Nielsen, K.K., de Riek, J., Roldán-Ruiz, I., Roulund, N., Taylor, C., Vosman, B., Barre, P. (2005) Development and mapping of a public reference set of SSR markers in Lolium perenne L. Mol Ecol. Notes 5: 551-557

Lübberstedt, T., Zein, I., Andersen, J.R., Wenzel, G., Krützfeldt, B., Eder, J., Ouzunova, M., Shi, C. (2005) Development and application of functional markers in maize. Euphytica 146:101-108

Shi, C., Thümmler, F., Wenzel, G., Melchinger, A.E., Lübberstedt, T. (2005) Differential gene expression in association with SCMV resistance comparing resistant and susceptible maize inbreds. Mol Breed 16: 173-184

Shi, C., Wenzel, G., Frei, U., Lübberstedt, T. (2005) From genomics to functional markers in maize. Progress in Botany 67: 53-70

Ingvardsen, C., Xing, Y., Xu, M., Lübberstedt, T. (2005) Molecular analysis of Sugarcane mosaic virus resistance in maize. Parasitica 61: 61-67

Muminovic, J., Melchinger, A.E., Merz, A., Lübberstedt, T. (2005) Genetic structure and diversity among radish (Raphanus sativus L.) varieties as inferred from AFLP and ISSR analysis. Journal of the American Society for Horticultural Science 130: 76-87

Jensen, L.B., Andersen, J., Frei, U., Xing, Y., Taylor, C., Holm, P., Lübberstedt, T. (2005) QTL mapping of vernalization response in perennial ryegras reveals cosegregation with an orthologue of wheat VRN1. Theor. Appl. Genet. 110: 526-537

Wollenweber, B., Porter, J., Lübberstedt, T. (2005) Need for multidisciplinary research towards a second green revolution. Curr. Opin. Plant Biol. 8: 1-5

Shi, C., Invardsen, C., Thümmler, F., Wenzel, G., Melchinger, A.E., Lübberstedt, T. (2005) Identification of genes differentially expressed in association with SCMV resistance in maize by combining SSH and cDNA array techniques. Mol. Gen. Genom. 273: 450-461

Yuan, L., Dußle, C.M., Muminovic, J., Melchinger, A.E., Lübberstedt, T. (2004) Targeted BSA mapping of Scmv1 and Scmv2 conferring resistance to SCMV using PstI/MseI compared to EcoRI/MseI AFLP markers. Plant Breeding 123: 434-437

Muminovic, J., Melchinger, A.E., Lübberstedt, T. (2004) Genetic diversity in lambs lettuce (Valeriana locusta L.) and related species determined by AFLP markers. Plant Breeding 123: 460-466

Muminovic, J., Melchinger, A.E., Lübberstedt, T. (2004) Genetic diversity in field and vegetable crops as determined by molecular markers. In: Genetic Resources and Biotechnology, Vol. 2, D. Thangadurai, T. Pullaiah, Pedro A. Balatti (eds.), p. 322-344, Regency Publications, New Delhi

Muminovic, J., Melchinger, A.E., Lübberstedt, T. (2004) Assessment of genetic diversity among celeriac varieties (Apium graveolens L. var. rapaceum) and Apium germplasm resources with AFLP markers. Plant Genetic Resources Characterisation & Utilisation 2: 189-198

Frisch, M., Quint, M., Lübberstedt, T., Melchinger, A.E. (2004) Duplicate marker loci can result in incorrect locus orders on linkage maps. Theor. Appl. Genet. 109: 305-316

Andersen, J.R., Lübberstedt, T. (2003) Functional markers in plants. Trends in Plant Sciences 8: 554-560

 

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